Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSIEKQVAEQLLEIKAVFLKPNEPFTWASGIKSPIYCDNRLTLGFPKVRQFIAKSLAEKIKQTFGEIDVVAGTATAGIPHAAWVSDLLDLPMVYVRSKAKEHGKGNQIEGPISKGQKVVVIEDLISTGGSSLKAVEALEEAGAEVVGIAAIFTYGLAKGKQLLEESGTKLVTLTNYDELIEVALNENYVTGEDMETLKEWKKNPEKWGK
2YZK Chain:A ((1-177))
-----MLAKVLKKRGAVLR---GDFVLSSGRRSSVYIDMRRLLGDESSYSVALDLLLEVGGQDLARSSAVIGVATGGLPWAAMLALRLSKPLGYVRPERKGHGTLSQVEGDP-PKGRVVVVDDVATTGTSIAKSIEVLRSNGYTVGTALVLVDRG-EGAGELLARMGVRLVSVATLKTILEKLGWGG----------------------
General information:
TITO was launched using:
RESULT:
Template:
2YZK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133863 for 1442 contacts (-92.8/contact) +
2D Compatibility (PS) -19423 + (NN) -4576 + (LL) 1724
1D Compatibility (HY) -7200 + (ID) 2700
Total energy: -166038.0 ( -115.14 by residue)
QMean score : 0.609
(partial model without unconserved sides chains):
PDB file :
Tito_2YZK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YZK-query.scw
PDB file :
Tito_Scwrl_2YZK.pdb
: