Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGIAVLGGAGYIGSHAVDELITRGYEVVVIDNLRTGHR---ES---I-HKKAKFYEGDIRDKAFLSSVFEKEKVDGVIHFAASSLVGESMEVPLDYLNNNVYGTQIVLEVMEEFDVKHIVFSSSAATYGEPERVPITEDMPT-NPESTYGETKLIMEKMMKWCDKA-YGMKFVALRYFNVAGAKADGSIGEDHKP-ESHLVPIILQVALGQREKLAIYGDDYNTPDGTCIRDYVQVEDLIDAHIRALEYLKNGGESNIFNLGSSNGFSVKEMLEAARTVTGKEIPAEVVPRRAGDPGTLIASSDKAREILGWEPTYTDVKDIIATAWKWHVSHPNGY |
| 1UDB Chain:A ((1-335)) | MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTR-TLDEMAQDTWHWQSRHPQG- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1UDB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -183537 for 2888 contacts (-63.6/contact) +
2D Compatibility (PS) -35411 + (NN) -17047 + (LL) 144
1D Compatibility (HY) -26400 + (ID) 6650
Total energy: -268901.0 ( -93.11 by residue)
QMean score : 0.610
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