Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEITIVKGDITEQEVDVIVNAANSGLLGGGGVDGAIHQAA-G-PDLLKECQEVI-NR---IGSCPAGEAVITSAGDLK---ATYIIHAVGPIWKDGEH-QEANKLASCYWKALDLAAGKDLTSIAFPNISTGVYGFPKKLAAEVALYTVRKWAEEEYDTSIKEIRFVCFDEENLKLYNKLINSEVV
1VHU Chain:A ((22-200))
-TLKLAQGDITQYPAKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMREQFGRDYIDHGEVVVTPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAGIYGCDLEKVVETFLEAVKNFKG----SAVKEVALVIYDRKSAEVALKVFERS--
General information:
TITO was launched using:
RESULT:
Template:
1VHU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112253 for 1437 contacts (-78.1/contact) +
2D Compatibility (PS) -19163 + (NN) -16525 + (LL) 816
1D Compatibility (HY) -12000 + (ID) 2700
Total energy: -161825.0 ( -112.61 by residue)
QMean score : 0.561
(partial model without unconserved sides chains):
PDB file :
Tito_1VHU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VHU-query.scw
PDB file :
Tito_Scwrl_1VHU.pdb
: