Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVRLYIARHGKTMFNTIGRAQGWSDTPLTTFGELGIKELGLGLKASNISFKEAFSSDSGRTLQTMEIILREVQQENIPYTRDKRIREWCFGSLDGGYDGDLFNGVLPRVSNGDMSHLTHEEIANLICQVDTAGWAEPWAILSNRILSGFTAIAKKIEDIGGGNAIVVSHGMTIATFLWLIDHSTP---R-SLGIDNGSVSVVDFEDGTFSIQSIGD-MSYREKGREILEKTLQ
1H2E Chain:A ((1-206))
--ATTLYLTRHGETKWNVERRMQGWQDSPLTEKGRQDAMRLGKRL--EAVELAAIYTSTSGRALETAEIVRGGRL---IPIYQDERLREIHLGDWEGKTHDEIR-QMDPIAFDHFWQA----------PHLYAPQRGERFCDVQQRALEAVQSIVDRH---EGETVLIVTHGVVLKTLMAAFKDTPLDHLWSPPYMYGTSVTIIEVDGGTFHVAVEGDVSHIEEVKEV-------
General information:
TITO was launched using:
RESULT:
Template:
1H2E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71123 for 1637 contacts (-43.4/contact) +
2D Compatibility (PS) -21160 + (NN) -5546 + (LL) 2692
1D Compatibility (HY) -8000 + (ID) 2650
Total energy: -105787.0 ( -64.62 by residue)
QMean score : 0.408
(partial model without unconserved sides chains):
PDB file :
Tito_1H2E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1H2E-query.scw
PDB file :
Tito_Scwrl_1H2E.pdb
: