Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKQFAVDFIEASREEASAILEFLNTVTEETDFILHTVSNQLSLSEMETFIENTLMTKNCICLIAKLKNKVIGLITIISQSDIEIEH-VGDLFIAVQKDYWGYGIGHILMEEAIEWASDNDITRRLELSVQGRNERAIHLYQKFGFEIDGLQTRGIKRENGEFLDIYRMSKLID
3DR6 Chain:A ((3-165))
-----AMTIRFADKADCAAITEIYNHAVLHTA--AIWNDRTVDTDNRLAWYEARQ-LLGYPVLVSEENGVVTGYASFGDWRSFDGFRYTVEHSVYVHPAHQGKGLGRKLLSRLIDEARRC-GKHVMVAGIESQNAASIRLHHSLGFTVTAQMPQVGV-KFGRWLDLTFMQLQLD
General information:
TITO was launched using:
RESULT:
Template:
3DR6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118562 for 1191 contacts (-99.5/contact) +
2D Compatibility (PS) -17452 + (NN) -3944 + (LL) 1064
1D Compatibility (HY) -2000 + (ID) 1300
Total energy: -142194.0 ( -119.39 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_3DR6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DR6-query.scw
PDB file :
Tito_Scwrl_3DR6.pdb
: