Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDNCIFCKIISGEIPSSKVYEDDEVLAFLDITQTTTGHTLLIPKKHVRNVLEMDEKTAQITFERLPKVARAVQAATKAKGMNIINNNEEIAGQTVFHAHVHLVPRFDESDGIKIHYTT--HEPDFEALAKLAKEIRKEIQL
1Y23 Chain:A ((5-143))
-ENCIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRDEFEPIGLNTLNNNGEKAGQSVFHYHMHIIPRYGKGDGFGAVWKTHADDYKPEDLQNISSSIAKRLA-
General information:
TITO was launched using:
RESULT:
Template:
1Y23.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54066 for 872 contacts (-62.0/contact) +
2D Compatibility (PS) -15068 + (NN) -7636 + (LL) 384
1D Compatibility (HY) -13600 + (ID) 3350
Total energy: -93336.0 ( -107.04 by residue)
QMean score : 0.468
(partial model without unconserved sides chains):
PDB file :
Tito_1Y23.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y23-query.scw
PDB file :
Tito_Scwrl_1Y23.pdb
: