Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKLVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIQAAGIEFDLAFTSVLKRAIKTTNLALEAADQLWVPVEKSWRLNERHYGGLTGKNKAEAAEQFGDEQVHIWRRSYDVLPPDMAKDDEHSAHTDRRYASLDDSVIPDAENLKVTLERALPFWEDKIAPALKDGKNVFVGAHGNSIRALVKHIKQLSDDEIMDVEIPNFPPLVFEFDEKLNLVSEYYLGK
1RII Chain:A ((6-221))
--SLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRRAITTAHLALDSADRLWIPVRRSWRLNERHYGALQGLDKAETKARYGEEQFMAWRRSYDTPPPPIERGSQFSQDADPRYADIGGG--PLTECLADVVARFLPYFTDVIVGDLRVGKTVLIVAHGNSLRALVKHLDQMSDDEIVGLNIPTGIPLRYDLDSAMRPLVRGGTYL
General information:
TITO was launched using:
RESULT:
Template:
1RII.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46791 for 1802 contacts (-26.0/contact) +
2D Compatibility (PS) -23602 + (NN) -7946 + (LL) 796
1D Compatibility (HY) -20400 + (ID) 5300
Total energy: -103243.0 ( -57.29 by residue)
QMean score : 0.517
(partial model without unconserved sides chains):
PDB file :
Tito_1RII.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RII-query.scw
PDB file :
Tito_Scwrl_1RII.pdb
: