Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPVKDFM-TKKLVYVSPDTTVAEAADLLREHHLRRLPVVE--NDQLLGLVTEGTMAEAQPSKATSLSI-Y-E--MNYLLNKTKIRDIMIKDIVTVSQYASLEDAIYLMMSRKIGVLPVVD-NGQLYGIITDRDVFKAFLEIAGY----GQEGYRLVILADEGIGVLSKVLNRLSSANLSVKRLVIIERK--A--GKKAVEIQLEGYADKDVLKQELVFDDVIVETLEKTVKKPLS
3KH5 Chain:A ((4-203))
-RVMKIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKIDENEVIDDYITRDVIVA-TPGERLKDVARTMVRNGFRRLPVVS-EGRLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNVRMEEIMKRDVIT
General information:
TITO was launched using:
RESULT:
Template:
3KH5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82801 for 1301 contacts (-63.6/contact) +
2D Compatibility (PS) -19801 + (NN) -5173 + (LL) 336
1D Compatibility (HY) -10400 + (ID) 2400
Total energy: -120239.0 ( -92.42 by residue)
QMean score : 0.331
(partial model without unconserved sides chains):
PDB file :
Tito_3KH5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KH5-query.scw
PDB file :
Tito_Scwrl_3KH5.pdb
: