Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIIIQRVNQASVSIEDDVVGSIEKGLVLLVGIAPEDTTEDIAYAVRKITSMRIFSDDEG-KMNLSIQDIKGSVLSISQFTLFADTKKGNRPAFTGAADPVKANQFYDIFNQELAN-H--VSVETGQFGADMQVSLINDGPVTIVLDTKNK
2OKV Chain:A ((1-149))
MKAVVQRVTRASVTVGGEQISAIGRGICVLLGISLEDTQKELEHMVRKILNLRVFEDESGKHWSKSVMDKQYEILCVSQFTLQC-VLKGNKPDFHLAMPTEQAEGFYNSFLEQLRKTYRPELIKDGKFGAYMQVHIQNDGPVTIELESPA-
General information:
TITO was launched using:
RESULT:
Template:
2OKV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77921 for 1066 contacts (-73.1/contact) +
2D Compatibility (PS) -15629 + (NN) -5921 + (LL) -12
1D Compatibility (HY) -11600 + (ID) 2900
Total energy: -113983.0 ( -106.93 by residue)
QMean score : 0.545
(partial model without unconserved sides chains):
PDB file :
Tito_2OKV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OKV-query.scw
PDB file :
Tito_Scwrl_2OKV.pdb
: