Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAKEKFDRSKSHANIGTIGHVDHGKTTLTAAITTVL--------------HKKSGKGTAMAYDQIDGAPEERERGITISTAHVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLSKNVGVPYIVVFLNKCDMVD---DEELLELVEMEVRDLLSEYDFPGDDVPVVKGSALKA-----LEGDAEWEAKIFELMDAVDEYIPTPERDTEKPFMMPVEDVFSITGRGTVATGRVERGQVKVGDEVEII--GLQEENKKTTVTGVEMFRKLLDYAEAGDNIGALLRGVSREEIQRGQV---LAKPGTITPHSKFKAEVYVLSKEEGGRHTPFFSNYRPQFYFRTTDVTG-IIHLP------------EGVEMVMPGDNTEMNVELISTIAIEEGT------RFSIREGGRTVGSGVVSTITE |
| 3VMF Chain:A ((7-430)) | ---------KPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQVDKIPFIPVSAWKGDNLIERSPNMPWYNGP-TLVEALDQLQP-PAKPVDKPLRIPVQNVYSIPGAGTVPVGRVETGVLRVGDKVVFMPPGVVGE-----VRSIEMHYQQLQQAEPGDNIGFAVRGVSKSDIKRGDVAGHLDKPPTVA--EEFEARIFVIWHPSA-----ITVGYTPVIHVHTASVSSRIIEIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQLGRFAMRDMNRTVGIGIVTDV-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VMF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -132864 for 3105 contacts (-42.8/contact) +
2D Compatibility (PS) -39439 + (NN) -12841 + (LL) 992
1D Compatibility (HY) -30400 + (ID) 7300
Total energy: -221852.0 ( -71.45 by residue)
QMean score : 0.421
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