Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMIKTNDFMEIMKGRRSIRNYDPAVKISKEEMTEILEEATTAPSSVNAQPWRFLVIDSPEGKEKLAPLASFNQTQVTTSSAVIAVFADMNNADYLEEIYSKA-VELGYMPQEVKDRQIAALTAHFEKLPAQVNRETILIDGGLVSMQLMLTARAHGYDTNPIGGYDKENIAETFGLDKERYVPVMLLSIGKAADEGYASYRLPIDTIAEWK
3GAG Chain:A ((2-205))--MMNDYLNFLDGRVSVRRFDPDAVLPNDLIKDMLEHASYAPSGNNFQPWRVVVVKNKNKQEDLKKL-AALQPQVATASAVFLLFGDENAYDL--TWWQEFHVQKGIITKDEAAARAERIRQYFDLHPEDKETQGLRLDVGLFAMNLMQVVRVYGYDSVPMRGVDFDAIKTYLDMPNG-WEPILMLPVGKALQAGNPHVRKSVAEFAEII


General information:
TITO was launched using:
RESULT:

Template: 3GAG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 854 -95825 -112.21 -472.04
target 2D structure prediction score : 0.64
Monomeric hydrophicity matching model chain A : 0.77

3D Compatibility (PKB) : -112.21
2D Compatibility (Sec. Struct. Predict.) : 0.64
1D Compatibility (Hydrophobicity) : 0.77
QMean score : 0.515

(partial model without unconserved sides chains):
PDB file : Tito_3GAG.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3GAG-query.scw
PDB file : Tito_Scwrl_3GAG.pdb: