Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence -----------------MGKKMTIASLILMTAGLT--ACGANDNAMNDTRNNGN---TRPIGYYTNE-NDADRQGDGIDHDGPVSELMEDQNDGNRNT--TNVNNRDRVTADDRVPLATDGTYNNTNNRNMN-----RNAAN--------------NGYDNQENRRLAAKIANRVKQVKNVNDTQVMVSDDRVVIAVKSHREFTKSDRDNVVKAARNYANGRDVQV-------STDKGLFRKLHKMNNR------------------------------------ 2VDW Chain:B ((1-287)) MDEIVKNIREGTHVLLPFYETLPELNLSLGKSPLPSLEYGANYFLQISRVNDLNRMPTDMLKLFTHDIMLPESDLDKVYEILKINSVKYYGRSTKADAVVADLSARNKLFKRERDAIKSTENNLYISDYKMLTFDVFRPLFDFVNEKYCIIKLPTLFGRGVIDTMRIYCSLFKNVRLLKCVSDSWLK--DSAIMVASDVCKKNLDLFMSHVKSVTKSSSWKDVNSVQFSILNNPVDTEFINKFLEFSNRVYEALYYVHSLLYSSMTSDSKSIENKHQRRLVKLLL

General information: TITO was launched using: RESULT: Template: 2VDW.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 803 67668 84.27 345.24 target 2D structure prediction score : 0.63 Monomeric hydrophicity matching model chain B : 0.59 3D Compatibility (PKB) : 84.27 2D Compatibility (Sec. Struct. Predict.) : 0.63 1D Compatibility (Hydrophobicity) : 0.59 QMean score : 0.111

(partial model without unconserved sides chains): PDB file : Tito_2VDW.pdb: (Unconserved sides chains are recalculated) : Sequence: align-2VDW-query.scw PDB file : Tito_Scwrl_2VDW.pdb: