Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMPLISIDSRKHLFYEEYGQG-IPIIFIHPPGMGRKVFYY-QRLLSKHFRVIFPDLSGHGDSDHIDQPASISYYANE-IAQFMDALHIDKAVLFGYSAGGLIAQHIGFTRPDKVSHLILSGAYPAVHN------VIGQKLHKLGMYLLEKNPGLLMKILA----GSHTKDRQLRSILTDHMKKA-DQAHWHQYYLDSLGYNCIEQLPRLEM-PMLFMYGGLRDWTFTNAGY-YRRSCRHAEFFRLEYQGHQLPTKQWKTCNELVTGFVLTHHS
1M33 Chain:A ((3-258))----------NIWWQTKGQGNVHLVLLHGWGLNAEVWRCIDEELSSHFTLHLVDLPGFGRSRGFGALS-----LADMAEAVLQQA-PDKAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLALQTMGTETARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWPHSESYIFAKAAHAPFISHPAEFCHLLVALKQRVGS


General information:
TITO was launched using:
RESULT:

Template: 1M33.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1382 -33860 -24.50 -141.08
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain A : 0.70

3D Compatibility (PKB) : -24.50
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.70
QMean score : 0.362

(partial model without unconserved sides chains):
PDB file : Tito_1M33.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1M33-query.scw
PDB file : Tito_Scwrl_1M33.pdb: