Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIADEIQSGLACTGYPFACDHGGVLPDIYLLGKTLGGGAVPLSAMVADREIFGVVHPGE-----HGSTFGGNPLAAAIGTPVVSMVVWGECQARSAKLGAHLHQRLADLIGDGAVA-LRGLGWWADVDIERALAIGTDMSMRLADRGVLLKDTYGAALRFAPPLVITAQEIDCAVRRFADALWEAGS
1MLZ Chain:B ((242-411))
LIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVNMAA-LQKFFVEQGVWIR-PFGKLIYLMPPYIILPQQLQ---------------
General information:
TITO was launched using:
RESULT:
Template:
1MLZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86764 for 1037 contacts (-83.7/contact) +
2D Compatibility (PS) -17425 + (NN) -6696 + (LL) 1164
1D Compatibility (HY) -12000 + (ID) 2850
Total energy: -124571.0 ( -120.13 by residue)
QMean score : 0.126
(partial model without unconserved sides chains):
PDB file :
Tito_1MLZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MLZ-query.scw
PDB file :
Tito_Scwrl_1MLZ.pdb
: