Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRGHVAEVNGGVAAMALWFLNFST--------------------------WDGVAGIYVEDLFVWPRFRRRGLARGLLSTLARECVDNRYTRLAWSVLNWNSDAIALYDRIGGQPQHEWTIYRLSGPRLAALAAPR
1U6M Chain:A ((59-175))
--ILVYEHAGEVAGIAVGYPAEDEKIIDEPLREVFKKHGLAEDVRLFIEEETLPNEWYLDTISVDERFRGMGIGSKLLDALPEVAKASGKQALGLNVDFDNPGARKLYASKGFKDVTTM-----------------
General information:
TITO was launched using:
RESULT:
Template:
1U6M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57786 for 580 contacts (-99.6/contact) +
2D Compatibility (PS) -9786 + (NN) -2663 + (LL) 1580
1D Compatibility (HY) -2400 + (ID) 1100
Total energy: -72155.0 ( -124.41 by residue)
QMean score : 0.386
(partial model without unconserved sides chains):
PDB file :
Tito_1U6M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U6M-query.scw
PDB file :
Tito_Scwrl_1U6M.pdb
: