Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLKITDDCINCDVCEPECPNGAISQGEEIYVIDPNLCTECVGHYDEPQCQQVCPVDCIPLDDANVESKDQLMEKYRKITGKA
1RGV Chain:A ((2-71))
--LYINDDCTACDACVEECPNEAITPGDPIYVIDPTKCSECVGAFDEPQCRLVCPADCIPDNPDYRETREELQEKYDRLHG--
General information:
TITO was launched using:
RESULT:
Template:
1RGV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40279 for 456 contacts (-88.3/contact) +
2D Compatibility (PS) -7542 + (NN) -9984 + (LL) 492
1D Compatibility (HY) -6000 + (ID) 2000
Total energy: -65313.0 ( -143.23 by residue)
QMean score : 0.398
(partial model without unconserved sides chains):
PDB file :
Tito_1RGV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RGV-query.scw
PDB file :
Tito_Scwrl_1RGV.pdb
: