Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNVLIVYAHPEPRSLNGALKDFAVARLEAAGHAVQVSDLYAMGWKA-VLDAGDSLEREASERFDPSATSLRAFENGWQSVDIAGEQDKLRWADTLILQFPLWWFSMPAILKGWIDRVYACGFAYGVGEHSDSHWGDRYGEGRMQGKRAMLVVTAGGWESHYAARGINGPMDDLLFPIHHGILHYPGFEVLPPFVVYRSGRIDAERFAALSEQLGRRLDDLQRAAPIPFRRQNGGDYLIPALTLRDELAPQRAGFAMHLAE
4QOD Chain:A ((5-222))
-KVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDS--------GLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ------------------------
General information:
TITO was launched using:
RESULT:
Template:
4QOD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146217 for 1678 contacts (-87.1/contact) +
2D Compatibility (PS) -23596 + (NN) -8679 + (LL) 1644
1D Compatibility (HY) -17600 + (ID) 4600
Total energy: -199048.0 ( -118.62 by residue)
QMean score : 0.415
(partial model without unconserved sides chains):
PDB file :
Tito_4QOD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QOD-query.scw
PDB file :
Tito_Scwrl_4QOD.pdb
: