Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKNARYAWRLSLGGLLLGLLACAVYLLAVPLGFKYGEIQVGHGLEHEGRIAWDAAGVPHIRAQSLEDGYFLLGYSHARDRLWQMEFARRYAGGTLSEVFGAKTLPMDRFARTLGFRRTAEGIYANLDAPTRVLLQRYSDGINAYLELAPAALPLEFSLVRHERPGPWGPVDSLSLHLLYSWTLSANLGMQLQRLALAEHLDLARINEVFAPYPGERPPATRDYASLYRSLHGTPDAGKLLGQLPGSNVEGIGSNNWVVSASRSATGKPLLANDPHLRLTNPAAFYLASLKIPGLSLTGANFAGAPLFVIGHNQRIAWGYTNTGSHIQDAYLERVDPQDPRRYLTPDGYRPFETRLERIAVRDGETVSLEVRSTRHGPVISDIYEPARLPQAQRDRLVIA--LAWTGLDRHDKTFPSLLAINRAEGWEQFLDAAANFGVPPQNMVYADVEGNIGYVSAGRVPLRGADDDLHGLAPSPGWESRYDWVGYVPESAKPRSLNPREGFIATANQRIVPPDNAFDFGHDWVLPYRYDRIREWLGGPGQRTLEDSLELQND--EFSSVMASLLPKMLEQVSDP--ELRASEAFALLQGWNHQA-----AADLAAPLIAGYWVRAFTRELLQPRIGTQLLASGWNQ----------RNY----DGFLRLI---LDGQADLRFWCGQ--EQGCDLKLNQSLRRALDELRAAHGSAPSGWKWGE-AHAALAEHVPFHKTPLRALFDLKN-NKGGDNFSVNVGRFDYSDPANPFNTRIAATLRMVIDLADFDNSRYALSTRNSGLP-----FD-GATDLNELWARGAYIRIADDAPDATDRQLVLRPSASSSGEPRP |
| 3K3W Chain:B ((1-535)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SNLWSTRPERVQEGSTVLINGPQFGWYNPAYTYGIGLHGAGFDVVGNTPFAYPIVLFGTNSEIAWGATAGPQDVVDIYQEKLNPSRADQYWFNNAWRTMEQRKERIQVRGQADREMTIWRTVHGPVMQFDYD---------QGAAYSKKRSWDGYEV--QSLLAWLNVAKARNWTEFLDQASKMA-ISINWYYADKHGNIGYVSPAFLPQRPADQ--DIRVPAKGD-GSMEWLGIKSFDAIPKAYNPPQGYLVNWNNKPAPDKTN-TDTYYWTYGDRMNELVSQYQQKDLFSVQEIWEFNQKASYSDVNWRYFRPHLEKLAQQLPADDSSKAALTMLLAWDGMEQDQGGQNAGPARVLFKTWLEEMYKQVLMPVVPESH-RAMYSQTGFATQQGPNPGSINLSMGTKVLLRALVLEAHPDPKRVNVFGERSSQEIMHTALQNAQARLSQEQGAQMARWTMPTSVHRFSDKNFT-----------GTPQTMPGNTFAFT-----------GYQNRGTENNRVVFDAKGV-EFCDAMPPGQSGFTDRNGVRSPHYEDQLKLYENFECKTMDVTHADIRRNAQSSTMLLIQPQP--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3K3W.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -135503 for 3724 contacts (-36.4/contact) +
2D Compatibility (PS) -53445 + (NN) -28822 + (LL) 18068
1D Compatibility (HY) -19600 + (ID) 5500
Total energy: -224802.0 ( -60.37 by residue)
QMean score : 0.328
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