Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQLKDKVIIITGGCQGLGRAMGEYLAGKGARL-ALVDLNRERLDEAVAACKAAGGDARAYVCNVADEEQVTHMVAQVASDFGAINGLVNNAGILRDGLTIKVKDGQLSKMSLAQWQSVIDVNLTGVFLCTREVAAKMIELKNEGAIVNISSIS-RAGNMGQANYSAAKAGVAADTVVWAKELARYGIRVAGVAPGFIETEMTAGMKPEALEKMTAGIPLKRMGKPVEIAHSVAYIF--ENDYYTGRVLELDGGLRL
3VZS Chain:C ((15-256))
-----RIAYVTGGMGGIGTAICQRLAKDGFRVVAGCGPNSPRREKWLEQQKALGFDFIASEGNVADWDSTKTAFDKVKSEVGEVDVLINNAGITRDVV--------FRKMTRADWDAVIDTNLTSLFNVTKQVIDGMAD-RGWGRIVNISSVNGQKGQFGQTNYSTAKAGLHGFTMALAQEVATKGVTVNTVSPGYIATDMVKAIRQDVLDKIVATIPVKRLGLPEEIASICAWLSSEESGFSTGADFSLNGGLHM
General information:
TITO was launched using:
RESULT:
Template:
3VZS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129362 for 1992 contacts (-64.9/contact) +
2D Compatibility (PS) -25761 + (NN) -8906 + (LL) 1116
1D Compatibility (HY) -15600 + (ID) 4800
Total energy: -183313.0 ( -92.02 by residue)
QMean score : 0.491
(partial model without unconserved sides chains):
PDB file :
Tito_3VZS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VZS-query.scw
PDB file :
Tito_Scwrl_3VZS.pdb
: