Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRRPLVAGNWKMHGTHSSVAELIKGLRQLALPSGVDVAVMPPCLFISQVIQGLAGKAIDVGAQNSAVEPMQGALTGETAPSQLADVGCSMVLVGHSERRLILGESDEVVSRKFAAAQSCGLVPVLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAIGTGLTASPAQAQEVHAAIRAQLAAENAE-VAKGVRLLYGGSVKAASAAELFGMPDIDGGLVGGASLNADEFGAICRAAGS
1TPW Chain:A ((3-245))
-RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSIYLDFARQKLDAK-IGVAAQNCYKVP-KGAFTGEISPAMIKDIGAAWVILGHPERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADN--VKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKTHVSDAVAQSTRIIYGGSVTGGNCKELASQHDVDGFLVGGASLKP-EFVDIINA---
General information:
TITO was launched using:
RESULT:
Template:
1TPW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -157562 for 2087 contacts (-75.5/contact) +
2D Compatibility (PS) -26373 + (NN) -10687 + (LL) 432
1D Compatibility (HY) -16400 + (ID) 5500
Total energy: -216090.0 ( -103.54 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_1TPW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TPW-query.scw
PDB file :
Tito_Scwrl_1TPW.pdb
: