Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKGHSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRLPSGDQPAEPGNA
3GIB Chain:B ((3-67))
---GQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPV--------------
General information:
TITO was launched using:
RESULT:
Template:
3GIB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44188 for 399 contacts (-110.7/contact) +
2D Compatibility (PS) -7183 + (NN) -1278 + (LL) 84
1D Compatibility (HY) -10800 + (ID) 3050
Total energy: -66415.0 ( -166.45 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_3GIB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GIB-query.scw
PDB file :
Tito_Scwrl_3GIB.pdb
: