Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKLLALLIMFYSGISVASAPTSWQFGFPAPATEIMEVIVKSHLFVMSVMVTIMLFVWALLAYVMFRFRKSKVTNISKTHHSILLEIVWFVIPTII-VGILAFENAKLLKLQEKIPKADITLKVIGHQWYWSYRYPEYQGVSFDSYI-----KEKDDFVKGDLK-------------LFSVDNNVVLPVNTNVRLQVTAGDVIHSWGVPAFGIKIDAIPGRLNEAWFNVKKPGVYYGQCYELCGQGHGFMPIVIEAVSKEDFNKWIENKKLVS
3OMA Chain:B ((1-252))
--------------LEIIGRPQPGGTGFQPSASPVATQIHWLDGFILVIIAAITIFVTLLILYAVWRFHEKRNKVPARFTHNSPLEIAWTIVPIVILVAIGAFSLPVLFNQQE-IPEADVTVKVTGYQWYWGYEYPDEE-ISFESYMIGSPATGGDNRMSPEVEQQLIEAGYSRDEFLLATDTAMVVPVNKTVVVQVTGADVIHSWTVPAFGVKQDAVPGRLAQLWFRAEREGIFFGQCSELCGISHAYMPITVKVVSEEAYAAWLEQHHHH-
General information:
TITO was launched using:
RESULT:
Template:
3OMA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -157111 for 1590 contacts (-98.8/contact) +
2D Compatibility (PS) -25370 + (NN) -16291 + (LL) 1704
1D Compatibility (HY) -21600 + (ID) 4700
Total energy: -223368.0 ( -140.48 by residue)
QMean score : 0.520
(partial model without unconserved sides chains):
PDB file :
Tito_3OMA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OMA-query.scw
PDB file :
Tito_Scwrl_3OMA.pdb
: