Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVRTVGKSAKKFVTGVIHIRATFNNTFINVTDVQG-NTLYQTSVGAHGFSGSRKSTPYAAGKASEVAAKTAIEKFGMKVVSVIIRGPG--------FGTEAAVKALQSCGLTVTSIADKTAISHNGCRLRKKRRV
4CW7 Chain:D ((13-129))
--------------KWGIAHIYSSYNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEK-GIVGVHIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGTRPKGGR--
General information:
TITO was launched using:
RESULT:
Template:
4CW7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60422 for 833 contacts (-72.5/contact) +
2D Compatibility (PS) -12133 + (NN) -6257 + (LL) 1400
1D Compatibility (HY) -3200 + (ID) 2050
Total energy: -82662.0 ( -99.23 by residue)
QMean score : 0.646
(partial model without unconserved sides chains):
PDB file :
Tito_4CW7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CW7-query.scw
PDB file :
Tito_Scwrl_4CW7.pdb
: