Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTETKEEKVHKVFEKISPSYDRMNSVISFKLHVKWRKETMKLM------RVQKGTNVLDVCCGTADWSIMMAEEIGPE-----GHVTGLDFSENMLKVGREKVKEADLH----NVELIHGNAMELP-FPDNSFDYVTIGFGLRNVPDYMQVLREMYRVLKPGGQLACIDTSQPNIPGWKQVFNAYFRYVMPVFGKFFAKSYKEYSWLQESTREFPGMARLAEMFQEAGFSYVRYISHSGGASATHFGFKKKEQ
4OBX Chain:A ((23-257))
--------------SVANRYDLMNDVMSLGIHRLWKDHFINKLDAGKRPNSTTPLNFIDVAGGSGDIAFGLLDHAESKFGDTESTMDIVDINPDMLKEGEKRAMEQGKYFKDPRVRFLVSNGEKLEEIDSDSKDIYTVSFGIRNFTDIQKGLNTAYRVLKPGGIFYCLEFSKIENPLMDFAYQQWAK-VLPVMGSMIANDYDSYQYLVESIERFPDQETFKSMIEKAGFKSAGYESLTFGICAIHWGIKV---
General information:
TITO was launched using:
RESULT:
Template:
4OBX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120124 for 1777 contacts (-67.6/contact) +
2D Compatibility (PS) -23514 + (NN) -7621 + (LL) 1860
1D Compatibility (HY) -15600 + (ID) 3250
Total energy: -168249.0 ( -94.68 by residue)
QMean score : 0.449
(partial model without unconserved sides chains):
PDB file :
Tito_4OBX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OBX-query.scw
PDB file :
Tito_Scwrl_4OBX.pdb
: