Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQDYISYIRSKVGHETIFLTYSGGILTDGKGRVLLQLRADKNSWGIIGGCMELGESSVDTLKREFFEETGLRVEPIRLLNVYTNFQDSYPNGDKAQTVGFIYEVSCPKPVNIEGFHNEETLQLDYFSKEDVKNITIVNEQHQLILDEYFSQTFQMGR
3FK9 Chain:A ((1-128))
------------------LQRVTNCIVVD-HDQVLLLQKPRRGWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKGIFSMVIFDE-GKIVSEWMLFTFKATEHEG-EMLK--QSPEGKLEWKKKDEVLELP-MAAGDKWIFKHVLHSDRLLYG
General information:
TITO was launched using:
RESULT:
Template:
3FK9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48063 for 909 contacts (-52.9/contact) +
2D Compatibility (PS) -13659 + (NN) -4499 + (LL) 1700
1D Compatibility (HY) -7600 + (ID) 1400
Total energy: -73521.0 ( -80.88 by residue)
QMean score : 0.388
(partial model without unconserved sides chains):
PDB file :
Tito_3FK9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FK9-query.scw
PDB file :
Tito_Scwrl_3FK9.pdb
: