Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL
3RYT Chain:C ((5-179))
-QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV---------------
General information:
TITO was launched using:
RESULT:
Template:
3RYT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128085 for 1384 contacts (-92.5/contact) +
2D Compatibility (PS) -18531 + (NN) -4132 + (LL) 1192
1D Compatibility (HY) -24000 + (ID) 6250
Total energy: -179806.0 ( -129.92 by residue)
QMean score : 0.637
(partial model without unconserved sides chains):
PDB file :
Tito_3RYT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RYT-query.scw
PDB file :
Tito_Scwrl_3RYT.pdb
: