Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVREIRQYRLKKISKEEKTPGCVKIKKCIIM
2A9K Chain:A ((17-184))
-ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKM---------------------
General information:
TITO was launched using:
RESULT:
Template:
2A9K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93861 for 1336 contacts (-70.3/contact) +
2D Compatibility (PS) -18649 + (NN) -9259 + (LL) 1904
1D Compatibility (HY) -18000 + (ID) 4450
Total energy: -142315.0 ( -106.52 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_2A9K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2A9K-query.scw
PDB file :
Tito_Scwrl_2A9K.pdb
: