Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEMETPSAINGNPSWHLADSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLFSRK
4LXD Chain:A ((7-163))
TGYDNREIVMKYIHYKLSQRGYEWDAG-------------------------------------------------------SEVVHLTLRQAGDDFSRRYRRDFAEMSSQLHLTPFTARGRFATVVEELFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEYLNRHLHTWIQDNGGWDAFVELYGP------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4LXD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99237 for 1000 contacts (-99.2/contact) +
2D Compatibility (PS) -15182 + (NN) -5724 + (LL) 4376
1D Compatibility (HY) -17200 + (ID) 4300
Total energy: -137267.0 ( -137.27 by residue)
QMean score : 0.406
(partial model without unconserved sides chains):
PDB file :
Tito_4LXD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LXD-query.scw
PDB file :
Tito_Scwrl_4LXD.pdb
: