Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------MILRNLLFLLPPEIAHSLAIMMLKRISYRKPIELPESLSVNCFNNKFRSPVGLAAGF-DKNAEVIRSMLSFG-FGFIEAGTVT--KHPQYGNAKPRIFRLIEDQGVINRLGFNNKGIDYFLKQISETKLDD--------CILGINIGKNSASKDQVSDYIDLIKMVYGKS-SYIVLNISSPNTPNLRNLHNRQELSELLKSITLTRKSIDNSESVPIMLKISPDIDQQTKEDIAGLALEYKIDGLTISNTTVSR-------DNLHSHHNESGGLSGRPLFKLSTELLSDIYKLTQGKILLIGCGGISSGADAYKKIKAGASLVQLYTALIYHGPRAVNKINLELAELVRKDGLSNIGEAVGCDCRF- |
| 1D3G Chain:A ((1-367)) | MATGDERFYAEHLMPTLQGLLDPESAHRLAVRFTS--LGLLPFQDSDMLEVRVLGHKFRNPVGIAAG-FDKHGEAVDGLYKM-GFGFVEIGSVTPK--PQEGNPRPRVFRLPEDQAVINRYGFNSHGLSVVE-HRLRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLGPL-ADYLVVNVSSPNTA----GLGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTV-SRPAGLQGA----LRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKRELEALLKEQGFGGVTDAIGADHR-R |
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General information:
TITO was launched using:
| RESULT:
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Template: 1D3G.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -174909 for 2922 contacts (-59.9/contact) +
2D Compatibility (PS) -35915 + (NN) -25112 + (LL) 740
1D Compatibility (HY) -24800 + (ID) 7200
Total energy: -267196.0 ( -91.44 by residue)
QMean score : 0.535
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