Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELNKIAASILLSGLIIMIVSNVVDMLYNPEKYKIEHQTMVATGSNEPQKKIEQVALDIGALMQSASLEKGKSIAKKCIACHSFDKGGANKVGPNLWNIVGNKKAHLGDSFNYSKAMLEKGGKWGYEELFAFLKSPKDYIKGTRMAFAGISNPQEIADLVSYLRQLSDNQVALPK
1QL4 Chain:B ((6-96))
----------------------------------------------------------------------GEKVFGKCKACHKLD--GNDGVGPHLNGVVGRTVAGV-DGFNYSDPMKAHGGDWTPEALQEFLTNPKAVVKGTKMAFAGLPKIEDRANLIAYLEGQQ--------
General information:
TITO was launched using:
RESULT:
Template:
1QL4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35230 for 614 contacts (-57.4/contact) +
2D Compatibility (PS) -9545 + (NN) -2432 + (LL) 6576
1D Compatibility (HY) -7600 + (ID) 2100
Total energy: -50331.0 ( -81.97 by residue)
QMean score : 0.595
(partial model without unconserved sides chains):
PDB file :
Tito_1QL4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QL4-query.scw
PDB file :
Tito_Scwrl_1QL4.pdb
: