Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNINNRIGIYPGTFDPITFGHIDIIKRACKLVDRLIIGVAENINKHTTFDAKLRTSMAENEIKRLEIDVDVVSFNGLLVKFAKEQNASVIIRGLRAVSDFDYEFQMSWVNYKLLPEIETIFLPASEDTQFISSSFVKEIARLGESVSKFVSVGVQKELINLNRIGSE
3LCJ Chain:A ((4-152))
-------AVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNPAKTGMFDLDERIAMVKESTTHLP-NLRVQVGHGLVVDFVRSCGMTAIVKGLRTGTDFEYELQMAQMN-KHIAGVDTFFVATAPRYSFVSSSLAKEVAMLGGDVSELLPEPVNRRLRDRLN----
General information:
TITO was launched using:
RESULT:
Template:
3LCJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102400 for 1166 contacts (-87.8/contact) +
2D Compatibility (PS) -16036 + (NN) -5376 + (LL) 992
1D Compatibility (HY) -12800 + (ID) 2600
Total energy: -138220.0 ( -118.54 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_3LCJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LCJ-query.scw
PDB file :
Tito_Scwrl_3LCJ.pdb
: