Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNSIIELTDYYSSNNYAPLKLVISKGKGVKVWDTDGKQYIDCISGFSVANQGHCHPTIVKAMTE--QASKLSIISRVLYSDNLGKWEEKICHLAKKD--KVLSLNSGTEAVEAAIKIARKWGSEVKGITDGQVEIIAMNNNFHGRTLGSLSLSNHDAYKAGFHPLLQGTTTVDFGDIEQLTQAIS-PNTAAIILEPIQGEGGVNIPPKGYIQAVRQLCDKHQILMIADEIQVGLGRTGKWFAMEWEQVVPDIYILGKALGGGLYPVSAVLANNDVMRVLTPGT------HGSTFGGNPLAIAISTAALDVLKDEQLVERSERLGSFLLKALLQL--KHPSIKEIRGRGLFIGIEL-NTDAAPFVDQL-----------IQRGI----------------------LCKD---------THRTIIRLSPPLVIDKEEIHQIVAAFQDVFKN |
4PPM Chain:B ((418-844)) | ---------------------VFRSAAGTQLYDDAGEAFLDMVAGYGCLNLGHNPQPVVNALKNYLDAQGPNFIQYISIPEQTAKLAEVLCRLAPGNMGRVFFSNSGTEAVEAAMKIAKA--------STGKPGIAYLRNSYHGKTLGALSITGRDKHRRYFTPLLDAMVEVPFGDLAALREALNREDVGALMIEPIQGEGGVHIPPAGYLQAVQQLCRETGVLLMVDEVQTGLGRTGKLFACEWDGIEPDVLMLSKSLSGGLIPIGATLCRADLWQKAY-GTADRFLVHSSTYGGGNLASVVALSALREILAQDLVGHAERMGAYFKQALSEIAARYPFVSEVRGRGLMLGIQFD-----------WHTTWKFLPDPVQAHLRAAMDRMEQALGEMFCMKFVTKLCQDHKILTFITANSSTVIRIQPPLIISKAEIDRFVGAFATV--- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4PPM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -167795 for 3031 contacts (-55.4/contact) +
2D Compatibility (PS) -38376 + (NN) -22448 + (LL) 2156
1D Compatibility (HY) -35600 + (ID) 7300
Total energy: -269363.0 ( -88.87 by residue)
QMean score : 0.501
|
|
|