Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVHVFDHPLIQHKLSYIRDVNTGTKEFRELVDEVGMLMAYEVTRDLELQDVDIETPVT-KMTAKRLAG-KKLAIVPILRAGLGMTDGILSLVPAARVGHIGLYRDPETL-------KAVEYFAKLPQDIT-ERQIIVVDPMLATGASAIEAITSLKKRGAKNIRFMCLIAAPEGVEKMHEAHPDVDIYIAALDEKLNDKAYITPGLGDAGDRLFGTK
1XTT Chain:A ((2-216))
--PLYVIDKPITLHILTQLRDKYTDQINFRKNLVRLGRILGYEISNTLDYEIVEVETPLGVKTKGVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGKEVPKDMDVYIYYKKIPDIRAKVDNVIIADPMIATASTMLKVLEEVVKANPKRIYIVSIISSEYGVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG--
General information:
TITO was launched using:
RESULT:
Template:
1XTT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -159875 for 1673 contacts (-95.6/contact) +
2D Compatibility (PS) -21725 + (NN) 272 + (LL) 296
1D Compatibility (HY) -16800 + (ID) 3400
Total energy: -201232.0 ( -120.28 by residue)
QMean score : 0.488
(partial model without unconserved sides chains):
PDB file :
Tito_1XTT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XTT-query.scw
PDB file :
Tito_Scwrl_1XTT.pdb
: