Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALVVKDIVKNFGEGLSETKVLKGINFEVEQGEFVILNGASGSGKTTLLTILGGLLSQTSGTVLYNDAPLFDKQHRPSDLRLEDIGFIFQSSHLVPYLKVIEQLTL-VGQEAGMTKQQSSTRAIQLLKNIGLEDRLNVYPHQLSGGEKQRVAIMRAFMNNPKIILADEPTASLDADRATKVVEMIRQQIKEQQMI--------GIMITHDR-RLFEYADRVIELEDGKITD
3FVQ Chain:B ((4-217))
-ALHIGHLSKSF----QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTN-LPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQ-RIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALD--------EQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRI--
General information:
TITO was launched using:
RESULT:
Template:
3FVQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107238 for 1591 contacts (-67.4/contact) +
2D Compatibility (PS) -22601 + (NN) -9953 + (LL) 844
1D Compatibility (HY) -15600 + (ID) 3700
Total energy: -158248.0 ( -99.46 by residue)
QMean score : 0.586
(partial model without unconserved sides chains):
PDB file :
Tito_3FVQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FVQ-query.scw
PDB file :
Tito_Scwrl_3FVQ.pdb
: