Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKLILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESKQQWIPVYKSWRLNERHYGGLQGLNKDDARKEFGEEQVHIWRRSYDVKPPAETEEQR--EAYLADRRYNHLDKRMMPYSESLKDTLVRVIPFWTDHISQYLLDGQTVLVSAHGNSIRALIKYLEDVSDEDIINYEIKTGAPLVYELTDDLEVIDKYYL
1YFK Chain:B ((5-227))
--KLVLIRHGESAWNLENRFSGWYDADLSPAGHEEAKRGGQALRDAGYEFDICFTSVQKRAIRTLWTVLDAIDQMWLPVVRTWRLNERHYGGLTGLNKAETAAKHGEAQVKIWRRSYDVPPPPMEPDHPFYSNISKDRRYADLTEDQLPSCESLKDTIARALPFWNEEIVPQIKEGKRVLIAAHGNSLRGIVKHLEGLSEEAIMELNLPTGIPIVYELDKNLKPI-----
General information:
TITO was launched using:
RESULT:
Template:
1YFK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75162 for 1819 contacts (-41.3/contact) +
2D Compatibility (PS) -23243 + (NN) -4289 + (LL) 416
1D Compatibility (HY) -18000 + (ID) 5200
Total energy: -125478.0 ( -68.98 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_1YFK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YFK-query.scw
PDB file :
Tito_Scwrl_1YFK.pdb
: