Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVYPQVLSIAGSDSGGGAGIQADLKAFQTFGVFGTSVITCITAQNTQGVHGVYPLSVESVKAQILAIRDDFSIKAFKMGALCNAQIIECVANALETCDF--GLCVLDPVMVAKNGALLLEEEAILSLKKRLLPKTNLLTPNLPEVYALTGVQ--ARDDKSASKAMGVLR-DLGVKNAVIKGGHTEHFQGEFSNDWVFLED--AEFILSAKRFNTKNTHGTGCTLSSLIVGLLAQGLDLKNAITKAKELLTIIIQNPLNIG----HGHGPLNLWSIKKHV
3RM5 Chain:A ((20-296))
-EKLPTVLSIAGTDPSGGAGIEADVKTITAHRCYAMTCITALNAQTPVKVYSINNTPKEVVFQTLESNLKDMKCNVIKTGMLTA-AAIEVLHEKLLQLGENRPKLVVDPVL---------GKDIVSLITEKVAPFADILTPNIPECYKLLGEERKVNGLQDIFQIAKDLAKITKCSNILVKGGH----EKYI-TDVLFLGAEQKFIIFKGNFVNTTHTHGTGCTLASAIASNLARGYSLPQSVYGGIEYVQNAVAIGCDVTKETVKDNGPINHVYAVEIP
General information:
TITO was launched using:
RESULT:
Template:
3RM5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -173999 for 2165 contacts (-80.4/contact) +
2D Compatibility (PS) -27183 + (NN) -6796 + (LL) 1476
1D Compatibility (HY) -16000 + (ID) 3700
Total energy: -226202.0 ( -104.48 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_3RM5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RM5-query.scw
PDB file :
Tito_Scwrl_3RM5.pdb
: