Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYKIIAIDIDGTLLNDTHEITPAVRDSIKAAKAKGVKVVLCTGRPLAGIKKSLIELDLLDEGDYAITFNGAVVLETASEKTLADITLNKTELEEIYAFCHAENVNVTYFDGKNMYVPSRKITEITCQDSLLLGTPLYHLPVEEAPESIHVSKVMLLDSPEKITDVIKKLPENIKEKFYVVRSVPYNLEFLQKGVNKGSALASLADKLGVDQSEVMSIGDQENDITMIEYAGMGVAMGNATEHIKEIANYTTTTNNEDGVAQAIQMLILDR-- |
| 1NF2 Chain:A ((1-267)) | MYRVFVFDLDGTLLNDNLEISEKDRRNIEKLS-RKCYVVFASGRMLVSTLNVEKKY--FKRTFPTIAYNGAIVYLPEEGVILNE-KIPPEVAKDIIEYIKPLNVHWQAYIDDVLYSEKDN-EEIKSYARHSNVDYRVEPNLSELVSKMGTTKLLLIDTPERLDELKEILSERFKDVVKVFKSFPTYLEIVPKNVDKGKALRFLRERMNWKKEEIVVFGDNENDLFMFEEAGLRVAMENAIEKVKEASDIVTLTNNDSGVSYVLERISTDCLD |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NF2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -142947 for 2246 contacts (-63.6/contact) +
2D Compatibility (PS) -29042 + (NN) -8811 + (LL) 652
1D Compatibility (HY) -18800 + (ID) 3850
Total energy: -202798.0 ( -90.29 by residue)
QMean score : 0.479
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