Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKPLVGINMKNYINTRAQTSEWLEATIPLLGNFSDVDTFIFPSMGTLETTANLLAGTSFGFGPQNMAPEKSGPLTGEFSVESIIDLSANYVEIGHAERKNLFHEKTSEIAKKIQLALDEKITPVVCVGEGIRANDTNELKNALKKQIEALFDTIQVTQFKNVVLAYEPEWAIGKANSADTDYIESAHQALREIIRELGGD-ETLVRIIYGGSVSKENAAEIVRQKNVDGLFVGRFGHKPQNFADIVSIVSKTKG
4MVA Chain:A ((25-277))
MRHPLVMGNWK-LNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK-
General information:
TITO was launched using:
RESULT:
Template:
4MVA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146952 for 2195 contacts (-66.9/contact) +
2D Compatibility (PS) -27343 + (NN) -9813 + (LL) -252
1D Compatibility (HY) -10800 + (ID) 4150
Total energy: -199310.0 ( -90.80 by residue)
QMean score : 0.604
(partial model without unconserved sides chains):
PDB file :
Tito_4MVA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MVA-query.scw
PDB file :
Tito_Scwrl_4MVA.pdb
: