Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKLGNDWDELLKNEFNQPYYLTLRQFLKKEYQ-TKKVFPDMYDIFNALKHTAYKDVKVVILGQDPYHGPGQAHGLSFSVQQGVQIPPSLQNIYLELHNDLNCEIPNNGYLIPWADQGVLLLNTVLTVRAGQANSHRGQGWEILTNHIIEIINQKEEPVVFLLWGSNAKEKLQLLTNPKHTAFTSVHPSPLSASRGFMGCKHFSKTNQFLEQNGVKPIDWQIPSI
3TR7 Chain:A ((7-225))
----TQTWQTVLGEEKQEPYFQEILDFVKKERKAGKIIYPPQKDIFNALKLTPYEAIKVVILGQDPYHGPNQAHGLAFSVRPGVPAPPSLQNIFKELHADLGVSIPSHGFLEKWAKQGVLLLNAALTVEAGKPQSHANIGWHRFTDKVIESLNDHPEGIVFLLWGSYAQKKSQLITNLRHRILKAPHPSPLSAARGFLGCRHFSKANQLLHEMGRGEIDWALD--
General information:
TITO was launched using:
RESULT:
Template:
3TR7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95897 for 1759 contacts (-54.5/contact) +
2D Compatibility (PS) -23273 + (NN) -10695 + (LL) 484
1D Compatibility (HY) -17600 + (ID) 5750
Total energy: -152731.0 ( -86.83 by residue)
QMean score : 0.595
(partial model without unconserved sides chains):
PDB file :
Tito_3TR7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TR7-query.scw
PDB file :
Tito_Scwrl_3TR7.pdb
: