Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VNDIIHDYLLKNIPKSSPFFKELEAYAKENEVPI-MEPDSLYCLLQILDIQKPKRILELGTAIGYSALKMADKLP-DAEIITVERDEERYEQAIHNIQRYGASDRVKVLLTDAIEGAEEILAHGPFDAIFIDAAKAQYEKFFHIYTVSLAENGVIYSDNVLFKGLALDMTPEKQRKLRVARKMRHFNDFLVTHPDFETTTIPLGDGLSISKRKKTGGVS
4OA5 Chain:A ((16-227))
--SKQDEYLNKLFAVDTEGALKAHKTAPSELRMAQLGTVEGQMLQLLIRMAGIHSIVEVGTCVGFSAICMAHALPSKGHIYTIEKDYENVVTANQNIVNCKLEDKITVLHGEALAQLNTLKEMAPFDMIFIDANKSSYLAYLNWAKMYIRKGGLIVADNTFLFGSVFDEHPTEKVSSNAHASMRAFNDELANKEKYLSTIIPTSEGMMVSIKLT-----
General information:
TITO was launched using:
RESULT:
Template:
4OA5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91194 for 1750 contacts (-52.1/contact) +
2D Compatibility (PS) -22712 + (NN) -10967 + (LL) -16
1D Compatibility (HY) -10800 + (ID) 2800
Total energy: -138489.0 ( -79.14 by residue)
QMean score : 0.545
(partial model without unconserved sides chains):
PDB file :
Tito_4OA5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OA5-query.scw
PDB file :
Tito_Scwrl_4OA5.pdb
: