Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LKIYKALGWFFKENWKSYAFGVTILFTIALLQLVPPQIIGYTVDAVTNDSLTKDKLIKWMIILVVAAILAYGGRYVWRMLIFGSDNKLQRTLRLRLFEHFTKMSPFFFQRYRTGDLMAHATNDITAIQQVAGIGVLTLSDSVLTGGTVIATMAITIDWRLTLIALLPMPFMVLGSSILGKKLHDRFHGAQAAFSMLNDKTQESISGIKVTRTFGQEKEDIQDFAKQTKEVVQKNISVAKVDAMFDPMISIIVGVSFVLSLGFGAKFVVDGELTIGQVIAFSNYLFLLIWPMLAFGFLYNIIQRGNASYDRVQHLLAEKEDVLDQEGALDTVPVGDLQVTMDKFTYPDESEP-VLADIHFNLKAGETLGIVGRTGSGKTSLLKLLMREYDTYEGKIAFANVKIQDYTVRALREAIGYVPQDQFLFSTTVRDNIRFGKPDAP-QEEVTKIAKLVSVDEDILGFENGYDTIVGERGVSLSGGQKQRLAIARALIMNPELLILDDALSAVDAKTE---EQILANLKENRSDKTTIISAHRLSSVEHANLIIVIDKGRIVERGTHMELMALDGWYAEMFREQQLEEALEEGGVADGSDE |
| 1JJ7 Chain:A ((21-253)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH-LSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMVQ------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1JJ7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -112396 for 1770 contacts (-63.5/contact) +
2D Compatibility (PS) -24828 + (NN) -11423 + (LL) 29440
1D Compatibility (HY) -14000 + (ID) 4450
Total energy: -137657.0 ( -77.77 by residue)
QMean score : 0.413
|
|
|