Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIIFVWAQDRAGNIGKDNKMPWHLPGDLQFFKKTTTGKTLVMGRKTYESLGKALPNRKTIVLTRDQGLKLDDAEILHSKEAVLALAETGEPIYIVGGAEIYRLFMDVADQLIVTKIDAEFEADTAFPEVDWENFSEVAKEFHEKDEKNKYNYTFYTYERN
3SA1 Chain:B ((6-163))
-VSFMVAMDENRVIGKDNNLPWRLPSELQYVKKTTMGHPLIMGRKNYEAIGRPLPGRRNIIVTRNEGYHVEGCEVAHSVEEVFELCKNEEEIFIFGGAQIYDLFLPYVDKLYITKIHHAFEGDTFFPEMDMTNWKEVFVEKGLTDEKNPYTYYYHVYEK-
General information:
TITO was launched using:
RESULT:
Template:
3SA1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92210 for 1157 contacts (-79.7/contact) +
2D Compatibility (PS) -17051 + (NN) -5167 + (LL) 128
1D Compatibility (HY) -18400 + (ID) 3750
Total energy: -136450.0 ( -117.93 by residue)
QMean score : 0.611
(partial model without unconserved sides chains):
PDB file :
Tito_3SA1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SA1-query.scw
PDB file :
Tito_Scwrl_3SA1.pdb
: