Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLVLIRHGQSEWNKLNLFTGWHDVDLSQEGVVEAMTAGKRIKEAGLEFDVAFTSVLTRAIKTLNYVLEESDQMWVPVHKSWRLNERHYGALQGLNKQETAEKYGADQVQKWRRSYDTLPPLLEENDERQAKNDRRYQLLDTHAIPSGENLKVTLERVIPYWMDTIAPEIKEGRRVVIAAHGNSLRALVKFLEGISDDEIMDLEIPTGVPLVYELNADLKPV--NKYYLDK
1RII Chain:A ((6-232))
-SLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRRAITTAHLALDSADRLWIPVRRSWRLNERHYGALQGLDKAETKARYGEEQFMAWRRSYDTPPPPIERGSQFSQDADPRYA--DIGGGPLTECLADVVARFLPYFTDVIVGDLRVGKTVLIVAHGNSLRALVKHLDQMSDDEIVGLNIPTGIPLRYDLDSAMRPLVRGGTYLD-
General information:
TITO was launched using:
RESULT:
Template:
1RII.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74934 for 1898 contacts (-39.5/contact) +
2D Compatibility (PS) -24560 + (NN) -8485 + (LL) 624
1D Compatibility (HY) -20400 + (ID) 5800
Total energy: -133555.0 ( -70.37 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_1RII.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RII-query.scw
PDB file :
Tito_Scwrl_1RII.pdb
: