Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNKRVAFILGGSGGIGKAVVQKLVEQNFAVAVHYAGNKAKAETLVENIVKSGGEAISVGGDVADEAQMIRAFDFIESQFGGIDVVINTAGIMKLSPIATLDMDDFDLIQRTNVRGTFVVSKQA--ALRVRNGGAIINFSTSVTRTSFPTYGAYVASKAGVESLTLILARELRGKDITVNAVAPGPTATPLFLTGKDDKTIDNLAKATPLERLGQPEDIAETVAFLAGPARWVNGQVIFT-NGGLA
3VZP Chain:C ((14-254))
---QRIAYVTGGMGGIGTAICQRLAKDGFRVVAGCGPNSPRREKWLEQQKALGFDFIASEGNVADWDSTKTAFDKVKSEVGEVDVLINNAGITRDVVFRKMTRADWDAVIDTNLTSLFNVTKQVIDGMADRGWGRIVNISSVNGQKGQFGQTNYSTAKAGLHGFTMALAQEVATKGVTVNTVSPGYIATDMVKAIRQD-VLDKIVATIPVKRLGLPEEIASICAWLSSEESGFSTGADFSLNGGL-
General information:
TITO was launched using:
RESULT:
Template:
3VZP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122298 for 2006 contacts (-61.0/contact) +
2D Compatibility (PS) -25903 + (NN) -12985 + (LL) 388
1D Compatibility (HY) -12400 + (ID) 4050
Total energy: -177248.0 ( -88.36 by residue)
QMean score : 0.483
(partial model without unconserved sides chains):
PDB file :
Tito_3VZP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VZP-query.scw
PDB file :
Tito_Scwrl_3VZP.pdb
: