Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKQFAVDFIEASRE-EASAILEFLNTVTEETDFILHTVSNQLSLSEMETFIENTLMTKNCICLIAK-LKNKVIGLITIISQSDIE-IEHVGDLFIAVQKDYWGYGIGHILMEEAIEWASDNDITRRLELSVQGRNERAIHLYQKFGFEIDGLQTRGIKRENGEFLDIYRMSKLID
2JLM Chain:A ((7-173))
---TTLFRFVECTEDQHALEILEILNDAIINSTALYDY-KP-RSKESMAAWFATKRQN-NFPIIGAVNEVGQLLGFASWGSFRAFPAYKYTVEHSVYIHKDYRGLGLSKHLMNELIKRAVES-EVHVMVGCIDATNVASIQLHQKLGFIHSGTIQQAGF-KFGRWLDAAFYQLTLD
General information:
TITO was launched using:
RESULT:
Template:
2JLM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116226 for 1175 contacts (-98.9/contact) +
2D Compatibility (PS) -17588 + (NN) -3117 + (LL) 644
1D Compatibility (HY) -4800 + (ID) 1750
Total energy: -142837.0 ( -121.56 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_2JLM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JLM-query.scw
PDB file :
Tito_Scwrl_2JLM.pdb
: