Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQPILQVSDLSVYYNKKKALKEVSMDFYPNEITALIGPSGSGKSTLLRAINRMGDLNPEVTLTGAVMYNGHNVYSPRTDTVEL----RKEIGMVFQQPNPFPM-SVFENVVYGLRLKGIKDKATLDEAVETSLKGASIWDEVKDRLHDSALG-LSGGQQQRVCIARTLATKPKIILLDEPTSALDPISAGKIEETLHGL--KDQYTMLLVTRSMQQASRISDRTGFFLDGNLIEYGNTKEMFMNPKHKETEDYITGKFG
3TIF Chain:B ((20-223))
-------------------ALKNVNLNIKEGEFVSIMGPSGSGKSTML---NIIGCLDKPTE--GEVYID--NIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFK-YRGAMSGEERRKRALECLKMA-ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKLRGF------------------
General information:
TITO was launched using:
RESULT:
Template:
3TIF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70585 for 1525 contacts (-46.3/contact) +
2D Compatibility (PS) -21399 + (NN) -13604 + (LL) 2760
1D Compatibility (HY) -14800 + (ID) 3950
Total energy: -121578.0 ( -79.72 by residue)
QMean score : 0.387
(partial model without unconserved sides chains):
PDB file :
Tito_3TIF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TIF-query.scw
PDB file :
Tito_Scwrl_3TIF.pdb
: