Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGQYDIT-GKACIMGILNVTPDSFSDGGSYTTIDSALNQVGEMLEQGVAIVDIGGESTRPGAVFVTAEEEIKRVVPMIKAIREVYPDLLLSIDTYKTEVAQAALDAGVHILNDVWSGLYDGKMLSLAAERNVPIILMH--------NQEEAVYQDIKKEVCEFLLERAERALEAGVSKDNIWIDPGFGFAKT-EEQNLELLKGLEQVCDL-----GYPVLFGISRKRTVNYLLGGNREVTERDMGTAALSAWAIAKGCQIVRVHNVEVNKDIVTVISQLV
2Y5S Chain:A ((11-283))
LQCGRFELTFERPLVMGILNATP----------ARDDALRRAERMIAEGADLLDIGGESTRPGAPPVPLDEELARVIPLVEALRPL--NVPLSIDTYKPAVMRAALAAGADLINDIW-GFRQPGAIDAVRDGNSGLCAMHMLGEPQTMQVGEPDYGDVVTDVRDFLAARAQALRDAGVAAERICVDPGFGFGKAVVDDNYALLAALPDTAPARPDGRAYPILAGMSRKSMLGAVIGGKPPL-ERVAASVAAALCAVERGAAIVRVHDVAATVDALSVWNAVR
General information:
TITO was launched using:
RESULT:
Template:
2Y5S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -200733 for 2157 contacts (-93.1/contact) +
2D Compatibility (PS) -27393 + (NN) -13978 + (LL) -328
1D Compatibility (HY) -16800 + (ID) 4900
Total energy: -264132.0 ( -122.45 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_2Y5S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y5S-query.scw
PDB file :
Tito_Scwrl_2Y5S.pdb
: