Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKAVHTKHAPAAIGPYSQGIIVNNMFYSSGQIPLTP-SGEMVNGDIKEQTHQVFSNLKAVLEEAGASFETVVKATVFIADMEQFAEVNEVYGQYFDT----HKPARSCVEVARLPKDALVEIEVIALVK
3VCZ Chain:A ((26-152))
-TKVLHTDSAPAAIGPYIQGVDLGNMVLTSGQIPVNPATGE-VPADIAAQARQSLDNVKAVVEASGLTVGDIVKMTVFVKDLNDFGTVNEVYGNFFDEHNVAHYPARSCVEVARLPKDVGIEIEAIAVR-
General information:
TITO was launched using:
RESULT:
Template:
3VCZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52714 for 947 contacts (-55.7/contact) +
2D Compatibility (PS) -13126 + (NN) -2637 + (LL) 480
1D Compatibility (HY) -12800 + (ID) 3500
Total energy: -84297.0 ( -89.01 by residue)
QMean score : 0.641
(partial model without unconserved sides chains):
PDB file :
Tito_3VCZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VCZ-query.scw
PDB file :
Tito_Scwrl_3VCZ.pdb
: