Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSQNSQIQPQARYILPSFIEHSSFGVKESNPYNKLFEERIIFLGVQVDDASANDIMAQLLVLESLDPDRDITMYINSPGGGFTSLMAIYDTMQYVRADIQTVCLGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSLSGVIQGQFSDLEIQAAEIERMRTLMETTLARHTGKDAGVIRKDTDRDKILTAEEAKDYGIIDTVLEYRKLSAQTA
1YG6 Chain:F ((2-192))
--------------LVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQP--LGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHR-------
General information:
TITO was launched using:
RESULT:
Template:
1YG6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114389 for 1364 contacts (-83.9/contact) +
2D Compatibility (PS) -21424 + (NN) -14161 + (LL) 1692
1D Compatibility (HY) -18400 + (ID) 4750
Total energy: -171432.0 ( -125.68 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_1YG6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YG6-query.scw
PDB file :
Tito_Scwrl_1YG6.pdb
: