Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSLAERTVLVTGANRGMGREYVAQLLGRKVAKVYAATRNP-----LAIDVSDPRVIPLQLDVTD----AVSVAEAADLATDVGILINNAGISRASSVLDKDTSALRGELETNLFGP-LALASAFADRIAERSGAIVNVSSVLAWLPL--GMSYGVSKAAMWSATESMRIELAPRGVQVVGVYVGLVDTDMGRFADAPKSDPADVVRQVLDGIEAGKEDVLADEMSRQVRASLNVPARERIARLMGN
2EHD Chain:B ((8-212))
--------VLITGASRGIG-EATARLLHAKGYRVGLMARDEKRLQALAAELEG--ALPLPGDVREEGDWARAVAAMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKNPFKGGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSV-----------KLKPEDVAQAVLFALE---------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2EHD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104720 for 1465 contacts (-71.5/contact) +
2D Compatibility (PS) -19490 + (NN) -7446 + (LL) 3696
1D Compatibility (HY) -9600 + (ID) 3150
Total energy: -140710.0 ( -96.05 by residue)
QMean score : 0.409
(partial model without unconserved sides chains):
PDB file :
Tito_2EHD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2EHD-query.scw
PDB file :
Tito_Scwrl_2EHD.pdb
: